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Xiaodong Cai

Photo of Xiaodong Cai

Xiaodong Cai

Professor | College of Engineering | Electrical & Computer Engineering Department
Work Phone: (305) 284-5329

Website: Academic Web Site
Resume
Intranet

HIGHER EDUCATION

    • University of Minnesota , Minnesota , M.S. in Biological Science. (2008)
    • New Jersey Institute of Technology, New Jersey, Ph.D. in Electrical Engineering. (2001)
    • National University of Singapore , Singapore , M.S. in Electrical Engineering. (1998)
    • Zhejiang University, China, B.S. in Electronic Engineering. (1989)

EXPERIENCE

    • University of Miami, Professor. (2015 - Present)
    • University of Miami, Associate Professor . (2010 - 2015)
    • University of Minnesota, . (2011)
    • University of Miami, Assistant Professor. Electrical and Computer Engineering (2004 - 2010)
    • University of Minnesota, Twin Cities, Postdoctoral Fellow. Electrical and Computer Engineering (2001 - 2004)

PUBLICATIONS

  • Juried or Refereed Journal Articles or Exhibitions

    • Wen, J., Tommer, K. H., Chen, Z., Cai, X. (2015).Genome-wide analysis of alternative transcripts in human breast cancer. Breast cancer research and treatment, 151, 295-307.
    • Huang, A., Xu, S., Cai, X. (2014).Empirical Bayesian Elastic Net for Multiple Quantitative Trait Locus Mapping. Heredity.
    • Wiley, D. J., Juan, I., Le, H., Cai, X., Baumbach, L., Beattie, C., D'Urso, G. (2014).Yeast Augmented Network Analysis (YANA): a new systems approach to identify therapeutic targets for human genetic diseases. F1000 Research, 0.209027778.
    • Huang, A., Martin, E. R., Vance, J. M., Cai, X. (2014).Detecting Genetic Interactions in Pathway-Based Genome-Wide Association Studies. Genetic Epidemiology, 38, 300-309.
    • Huang, A., Xu, S., Cai, X. (2014).Whole-Genome Quantitative Trait Locus Mapping Reveals Major Role of Epistasis on Yield of Rice. PLoS One, 9, e87330.
    • Huang, A., Xu, S., Cai, X. (2013).Empirical Bayesian LASSO-logistic regression for multiple binary trait locus mapping. BMC genetics, 14, article 5.
    • Cai, X., Bazerque, J. A., Giannakis, G. B. (2013).Inference of gene regulatory networks with sparse structural equation models exploiting genetic perturbations. PLOS Computational Biology, 9, e1003068. doi:10.1371/journal.pcbi.1003068.
    • Wen, J., Chen, Z., Cai, X. (2013).A Biophysical Model for Identifying Splicing Regulatory Elements and Their Interactions. PLoS ONE, 8, e54885.
    • Han, D., Cai, X., Wen, J., Kenyon, N. S., Chen, Z. (2012).From biomarkers to a clue of biology: a computation-aided perspective of immune gene expression profiles in human type 1 diabetes. Frontiers in Immunological Tolerance, 3, 320.
    • Han, D., Cai, X., Wen, J., Matheson, D., Skyler, J. S., Kenyon, N. S., Chen, Z. (2012).Innate and adaptive immune gene expression profiles as biomarkers in human type 1 diabetes. Clinical & Experimental Immunology, 170, 131-138.
    • Cai, X., Huang, A., Xu, S. (2011).Fast Empirical Bayesian LASSO for Multiple Quantitative Trait Locus Mapping. BMC Bioinformatics, 12.
    • Hu, Z., Li, Y., Song, X., Han, Y., Cai, X., Xu, S., Li, W. (2011).Genomic value prediction for quantitative traits under the epistatic model. BMC Genetics, 12, doi:10.1186/1471-2156-12-15.
    • Xu, Z., Cai, X. (2011).Weighted Next Reaction Method and Parameter Selection for Efficient Simulation of Rare Events in Biochemical Reaction Systems. EURASIP Journal on Bioinformatics and Systems Biology, 2011.
    • Wang, D., Wang, X., Cai, X. (2011).Optimal Power Control for Multi-User Relay Networks Over Fading Channels. IEEE Transactions on Wireless Communications, 10, 199-207.
    • Wen, J., Chiba, A., Cai, X. (2010).Computational identification of tissue-specific alternative splicing elements in mouse genes from RNA-Seq. Nucleic Acids Researh, 38, 7895-7907.
    • Cai, X., Wen, J. (2009).Efficient Exact and K-Skip Methods for Stochastic Simulation of Coupled Chemical Reactions. Journal of Chemical Physics, 64108.
    • Liu, J., Lu, K., Cai, X., Murthi, M. (2009).Regenerative Cooperative Diversity with Path Selection and Equal Power Consumption in Wireless Networks. IEEE Transactions on Wireless Communications, vol. 8, 3926-3932.
    • Cai, X., Yuan, Z. (2009).Stochastic Modeling and Simulation of the p53-MDM2/MDMX Loop. Journal of Computational Biology, 917-933.
    • Xu, Z., Cai, X. (2009).Stochastic Simulation of Delay-Induced Circadian Rhythms in Drosophila. EURASIP Journal on Bioinformatics and Systems Biology, 386853.
    • Xu, Z., Cai, X. (2008).Unbiased tau-Leap Methods for Stochastic Simulation of Chemically Reacting Systems. Journal of Chemical Physics, 128, 154112.
    • Cai, X., Xu, Z. (2007).K-Leap Method for Accelerating Stochastic Simulations of Coupled Chemical Reactions. Journal of Chemical Physics, 126, 74102.
    • Cai, X. (2007).Exact Stochastic Simulation of Coupled Chemical Reactions with Delays. Journal of Chemical Physics, 126, 124108.
    • Cai, X., Wang, X. (2007).Stochastic Modeling and Simulation of Gene Networks. IEEE Signal Processing Magazine, 24, 27-36.
    • Ribeiro, A., Cai, X., Giannakis, B. (2006).Opportunistic Multipath for Bandwidth-Efficient Cooperative Networking. IEEE Transactions on Wireless Communications, 5, 2321-2327.
    • Cai, X., Giannakis, G. (2006).Identifying Differentially Expressed Genes in Microarray Experiments with Model-Based Variance Estimation. IEEE Transactions on Signal Processing, 54, 2418-2426.
    • Cai, X., Giannakis, G. (2006).Differential Space-Time Modulation with Transmit-Beamforming for Correlated MIMO Fading Channels. IEEE Transactions on Signal Processing, 54, 1279-1288.
    • Yu, Y., Cai, X., Giannakis, G. (2006).On the Instability of Slotted Aloha with Capture. IEEE Transactions on Wireless Communications, 5, 257-261.
    • Cai, X., Yao, Y., Giannakis, G. (2005).Achievable Rates in Low-Power Relay-Links over Fading Channels. IEEE Transactions on Communications, 53, 184-194.
    • Cai, X., Giannakis, G. (2005).Adaptive PSAM Accounting for Channel Estimation and Prediction Errors. IEEE Transactions on Wireless Communications, 4, 246-256.
    • Ribeiro, A., Cai, X., Giannakis, G. (2005).Symbol Error Probabilities for General Cooperative Links. IEEE Transactions on Wireless Communications, 4, 1264-1273.
    • Yao, Y., Cai, X., Giannakis, G. (2005).On Energy Efficiency and Optimum Resource Allocation in Wireless Relay Transmissions. IEEE Transactions on Wireless Communications, 4, 2917-2927.
    • Cai, X., Giannakis, G., Zoltowski, M. (2005).Space-Time Spreading and Block Coding for Correlated Fading Channels in the Presence of Interference. IEEE Transactions on Communications, 5, 515-525.
    • Cai, X., Giannakis, G. (2004).Error Probability Minimizing Pilots for OFDM with M-PSK Modulation over Rayleigh Fading Channels. IEEE Transactions on Vehicular Technology, 53, 146-155.
    • Cai, X., Zhou, S., Giannakis, G. (2004).Group-Orthogonal Multi-Carrier CDMA. IEEE Transactions on Communications, 52, 90-99.
    • Cai, X., Giannakis, G. (2004).Performance Analysis of Combined Transmit Selection Diversity and Receive Generalized Selection Combining in Rayleigh Fading Channels. IEEE Transactions on Wireless Communications, 3, 1980-1983.
    • Sun, Y., Cai, X. (2004).Multiuser Detection for CDMA Random Access Network with Retransmission Diversity. IEEE Transaction on Signal Processing, 52, 826-832.
    • Cai, X., Giannakis, G. (2003).A Two Dimensional Channel Simulation Model for Shadow Fading Processes. IEEE Transactions on Vehicular Technology, 52, 1558-1567.
    • Cai, X., Giannakis, G. (2003).Benchmarking Performance and Suppressing Inter-Carrier Interference in Wireless Mobile OFDM. IEEE Transactions on Communications, 51, 2047-2056.
    • Cai, X., Sun, Y., Akansu, A. N. (2003).Performance of DS-CDMA Random Access Systems with Packet Combining in Fading Channels. IEEE Transactions on Wireless Communications, 2, 413-419.
    • Cai, X., Ge, H., Akansu, A. (2002).Blind Reduced-Rank MMSE Detector for DS-CDMA Systems. EURASIP Journal on Applied Signal Processing, 1365-1376.
    • Chen, H., Cai, X. (1997).Optimization of Transmitter and Receiver Filters for OQAM-OFDM Systems Using Nonlinear Programming. IEICE Transactions on Communications, 1680-1687.